data source

links to databases, ftps ...

BioMart of Ensembl

large-scale data mining tool to get customized data from Ensembl

cisRED: cis-regulatory element database

The cisRED database holds conserved sequence motifs identified by genome scale motif discovery, similarity, clustering, co-occurrence and coexpression calculations

Reactome

Reactome - a curated knowledgebase of biological pathways mirror URL: http://www.genomeknowledge.org/

NAR Database Categories List

Molecular Biology Database Collection from Nucleic Acids Research (NAR). Each year the first issue is devoted to biological databases, and a later issue to relevant web-based software resources.

Swiss Institute of Bioinformatics

providing several databases: expasy proteomics server, Ashbya Genome Database, Cancer Immunome Database, Eukaryotic Promoter Database (EPD), GermOnline, PROSITE, Swiss-Prot and TrEMBL, SWISS-2DPAGE, SWISS-MODEL Repository

NAR Web Server Issue (July 1, 2005)

categorical links

DBTSS

Database of Transcriptional Start Sites: 8,308 human genes and 4,276 mouse genes are found to have putative multiple promoters, which are regarded as alternative promoters.

Bioinformatics Links Directory from UBC

curated links to molecular resources, tools and databases from UBC Bioinformatics Centre, including all links contained in the NAR Webserver issue

pathway database resource

Pathguide: The Pathway Resource List

Textpresso

An information retrieval and extraction system for biological literature -- C. elegans version.

iHOP

Information Hyperlinked over Proteins (iHOP)

proteome

protein interaction, proteomics

HPRD

Human Protein Reference Database

NCBI ftp

 

SMD ftp

 

GeneOntology ftp

 

Gene Ontology

The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism