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EMBOSS
EMBOSS is "The European Molecular Biology Open Software Suite"
- 2007-10-18 emboss http://emboss.sourceforge.net/
Debian Med http://www.us.debian.org/devel/debian-med/
Debian-Med: Molecular Biology and Medical Genetics http://www.us.debian.org/devel/debian-med/microbio
debian emboss package http://packages.debian.org/unstable/science/emboss
pkg-emboss wiki http://wiki.debian.org/pkg-emboss
emboss explorer/server: http://emboss.sourceforge.net/servers/
pfam2lindna.py and lindnaface.py in proj200303 to output in lindna format to draw linear maps of dna constructs.
output_chr_id2pos_ls() of Classify2010AccessionsIntoAlignmentGroup.py also outputs data in lindna format.
Gene Regulatory Networks Special Feature (PNAS)