hto-g cluster

customizing python libraries: 02-17-05 python libraries in HOME directory are not recognized when job submitted. Adding 'source /.bash_profile' to the shell script helps.
parallel job submission: MACRO #$ -pe mpich 4 is not necessary to start the parallel job. It just tells qsub system to allocate 4 nodes and displays them when you type 'qstat'. The number of nodes and the file specifying the nodes are encoded in $NHOSTS and $TMPDIR/machines respectively. Pass them to mpirun. OR, you just pass whatever number and your own machine file to mpirun. It's also fine.
specify qsub option file: 08-20-05 qsub -@ .qsub.options qjob/graph_merge4.sh.
show the full name of the submitted job: 08-22-05 -r i.e. qsub -r -u yuhuang|less.
ssh in qsubbed job: 08-31-05 The script will only run to the commandline containing 'ssh'. It ignores the commandlines after it. So you can only put this kind of commandline at the end of a script.

Yu Huang 2006-03-25

November 2009

Yu S. Huang Homepage, USC MCB/CMB