annot

stuff about annotation project, started in 2004/07.

datasets

info about microarray datasets

CART/rpart

Classification And Regression Tree, called rpart (Recursive Partitioning and Regression Trees) or randomForest in R

bug

 

pleiotropy

pleiotropy related stuff, alternative splicing

protein interaction

protein interaction data source, results

original density

how the original density looks like for those low dense clusters

results

intermediate prediction results

paper

manuscripts are here

What causes gene loss in GeneOntology informative nodes?

 

TF

Transcriptional Factor(TF) related stuff, i.e. TFBS

layout of informative nodes

node label is no meaning, just an internal number. Edge label(weight) is percentage of genes inherited by the child. Commandline: go_informative_node.py -k hs_fim_121 -n2 -b -s 200 > /tmp/yuhuang/hs_fim_121.go.n2.s200

log-2006-3-to-9

some temporary, inspective results

log 2006-10

 

annot_references