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my bibliography
- Haiyan Hu, Xifeng Yan, Yu Huang, Jiawei Han and Xianghong Jasmine Zhou (2005): Mining coherent dense subgraphs across massive biological networks for functional discovery. - Bioinformatics, 21 Suppl 1:i213-21.
- Yu Huang, Haifeng Li, Haiyan Hu, Xifeng Yan, Michael S. Waterman, Haiyan Huang and Xianghong Jasmine Zhou (2007): Systematic discovery of functional modules and context-specific functional annotation of human genome. - Bioinformatics, 23:i222--229.
- Fei Pan, Kiran Kamath, Kangyu Zhang, Sudip Pulapura, Avinash Achar, Juan Nunez-Iglesias, Yu Huang, Xifeng Yan, Jiawei Han, Haiyan Hu, Min Xu, Jianjun Hu and Xianghong Jasmine Zhou (2006): Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data. - Bioinformatics, 22(13):1665-7.
- Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu and Xianghong Jasmine Zhou (2007): A graph-based approach to systematically reconstruct human transcriptional regulatory modules. - Bioinformatics, 23:i577--586.
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Gene Regulatory Networks Special Feature (PNAS)