ref1

This folder holds the following references to publications, sorted by year and author.

There are 1219 references in this bibliography folder.

Affymetrix/Cold Spring Harbor Laboratory (2009).
Post-transcriptional processing generates a diversity of 5[prime]-modified long and short RNAs
Nature, 457:1028--1032.

Armour, JA (2009).
Human genetics: Sharp focus on the variable genome
Nature, 461:735--736.

Bikard, D, Patel, D, Le Mette, C, Giorgi, V, Camilleri, C, Bennett, MJ, and Loudet, O (2009).
Divergent Evolution of Duplicate Genes Leads to Genetic Incompatibilities Within A. thaliana
Science, 323:623--626.

Boerjan, W and Vuylsteke, M (2009).
Integrative genetical genomics in Arabidopsis
Nat Genet, 41:144--145.

Cahan, P, Li, Y, Izumi, M, and Graubert, TA (2009).
The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells
Nat Genet, advanced online publication.

Charlesworth, B (2009).
Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation
Nat Rev Genet, 10:195--205.

Conrad, DF, Pinto, D, Redon, R, Feuk, L, Gokcumen, O, Zhang, Y, Aerts, J, Andrews, TD, Barnes, C, Campbell, P, Fitzgerald, T, Hu, M, Ihm, CH, Kristiansson, K, MacArthur, DG, MacDonald, JR, Onyiah, I, Pang, AW, Robson, S, Stirrups, K, Valsesia, A, Walter, K, Wei, J, Tyler-Smith, C, Carter, NP, Lee, C, Scherer, SW, and Hurles, ME (2009).
Origins and functional impact of copy number variation in the human genome
Nature, advance online publication.

Coop, G, Pickrell, JK, Novembre, J, Kudaravalli, S, Li, J, Absher, D, Myers, RM, Cavalli-Sforza, LL, Feldman, MW, and Pritchard, JK (2009).
The Role of Geography in Human Adaptation
PLoS Genet, 5:e1000500.

Cordell, HJ (2009).
Detecting gene-gene interactions that underlie human diseases
Nat Rev Genet, 10:392--404.

Dean, MD and Nachman, MW (2009).
Faster fertilization rate in conspecific versus heterospecific matings in house mice.
Evolution, 63(1):20-8.

Duret, L (2009).
Mutation Patterns in the Human Genome: More Variable Than Expected
PLoS Biology, 7:e28 EP -.

Fu, J, Keurentjes, JJ, Bouwmeester, H, America, T, Verstappen, FW, Ward, JL, Beale, MH, de Vos, RC, Dijkstra, M, Scheltema, RA, Johannes, F, Koornneef, M, Vreugdenhil, D, Breitling, R, and Jansen, RC (2009).
System-wide molecular evidence for phenotypic buffering in Arabidopsis
Nat Genet, 41:166--167.

Gerke, J, Lorenz, K, and Cohen, B (2009).
Genetic interactions between transcription factors cause natural variation in yeast.
Science, 323(5913):498-501.

Gusev, A, Lowe, JK, Stoffel, M, Daly, MJ, Altshuler, D, Breslow, JL, Friedman, JM, and Pe'er, I (2009).
Whole population, genome-wide mapping of hidden relatedness
Genome Research, 19:318--326.

Henrichsen, CN, Vinckenbosch, N, Zollner, S, Chaignat, E, Pradervand, S, Schutz, F, Ruedi, M, Kaessmann, H, and Reymond, A (2009).
Segmental copy number variation shapes tissue transcriptomes
Nat Genet, advanced online publication.

Hodgkinson, A, Ladoukakis, E, and Eyre-Walker, A (2009).
Cryptic Variation in the Human Mutation Rate
PLoS Biology, 7:e27 EP -.

Irizarry, RA, Wu, H, and Feinberg, AP (2009).
A species-generalized probabilistic model-based definition of CpG islands.
Mamm Genome.

Lincoln, MR, Ramagopalan, SV, Chao, MJ, Herrera, BM, DeLuca, GC, Orton, S, Dyment, DA, Sadovnick, AD, and Ebers, GC (2009).
Epistasis among HLA-DRB1, HLA-DQA1, and HLA-DQB1 loci determines multiple sclerosis susceptibility
Proceedings of the National Academy of Sciences, 106:7542--7547.

Lister, R and Ecker, JR (2009).
Finding the fifth base: Genome-wide sequencing of cytosine methylation
Genome Research, 19:959--966.

Lister, R, Pelizzola, M, Dowen, RH, Hawkins, RD, Hon, G, Tonti-Filippini, J, Nery, JR, Lee, L, Ye, Z, Ngo, Q, Edsall, L, Antosiewicz-Bourget, J, Stewart, R, Ruotti, V, Millar, AH, Thomson, JA, Ren, B, and Ecker, JR (2009).
Human DNA methylomes at base resolution show widespread epigenomic differences
Nature, advance online publication.

Madsen, BE and Browning, SR (2009).
A Groupwise Association Test for Rare Mutations Using a Weighted Sum Statistic
PLoS Genet, 5:e1000384.

Malone, CD and Hannon, GJ (2009).
Small RNAs as Guardians of the Genome
Cell, 136:656--668.

Manenti, G, Galvan, A, Pettinicchio, A, Trincucci, G, Spada, E, Zolin, A, Milani, S, Gonzalez-Neira, A, and Dragani, TA (2009).
Mouse Genome-Wide Association Mapping Needs Linkage Analysis to Avoid False-Positive Loci
PLoS Genetics, 5:e1000331.

Neher, RA and Shraiman, BI (2009).
Competition between recombination and epistasis can cause a transition from allele to genotype selection
Proceedings of the National Academy of Sciences.

Pickrell, JK, Coop, G, Novembre, J, Kudaravalli, S, Li, JZ, Absher, D, Srinivasan, BS, Barsh, GS, Myers, RM, Feldman, MW, and Pritchard, JK (2009).
Signals of recent positive selection in a worldwide sample of human populations
Genome Research, 19:826--837.