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noncoding RNA

  1. None None Affymetrix/Cold Spring Harbor Laboratory (2009): Post-transcriptional processing generates a diversity of 5[prime]-modified long and short RNAs. - Nature, 457:1028--1032.
  2. Michael J Axtell, Calvin Jan, Ramya Rajagopalan and David P Bartel (2006): A two-hit trigger for siRNA biogenesis in plants. - Cell, 127(3):565-77.
  3. Jian-Fu Chen, Elizabeth M Mandel, J Michael Thomson, Qiulian Wu, Thomas E Callis, Scott M Hammond, Frank L Conlon and Da-Zhi Wang (2006): The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. - Nat.Genet., 38:228–233.
  4. Jennifer Couzin (2005): CANCER BIOLOGY: A New Cancer Player Takes the Stage. - Science, 310:766–767.
  5. Stephen P Grigg, Claudia Canales, Angela Hay and Miltos Tsiantis (2005): SERRATE coordinates shoot meristem function and leaf axial patterning in Arabidopsis. - Nature, 437(7061):1022-6.
  6. Klavs R Hansen, Gavin Burns, Juan Mata, Thomas A Volpe, Robert A Martienssen, Jurg Bahler and Genevieve Thon (2005): Global Effects on Gene Expression in Fission Yeast by Silencing and RNA Interference Machineries. - Molecular and Cellular Biology, 25:590–601.
  7. Ian R. Henderson and Steven E. Jacobsen (2008): Sequencing sliced ends reveals microRNA targets. - Nat Biotech, 26:881--882.
  8. Cintia F Hongay, Paula L Grisafi, Timothy Galitski and Gerald R Fink (2006): Antisense transcription controls cell fate in Saccharomyces cerevisiae. - Cell, 127(4):735-45.
  9. Eran Hornstein, Jennifer H Mansfield, Soraya Yekta, Jimmy Kuang-Hsien Hu, Brian D Harfe, Michael T McManus, Scott Baskerville, David P Bartel and Clifford J Tabin (2005): The microRNA miR-196 acts upstream of Hoxb8 and Shh in limb development. - Nature., 438:671–674.
  10. Jason M Johnson, Stephen Edwards, Daniel Shoemaker and Eric E Schadt (2005): Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments. - Trends.in.Genetics ., 21:93–102.
  11. Jan Krutzfeldt, Nikolaus Rajewsky, Ravi Braich, Kallanthottathil G Rajeev, Thomas Tuschl, Muthiah Manoharan and Markus Stoffel (2005): Silencing of microRNAs in vivo with /`antagomirs/'. - Nature., 438:685–689.
  12. Ji Lee, Zhihua Li, Rachel Brower-Sinning and Bino John (2007): Regulatory circuit of human microrna biogenesis. - PLoS Computational Biology, 3:e67 EP -.
  13. Dajana Lobbes, Ghanasyam Rallapalli, Dominik D Schmidt, Cathie Martin and Jonathan Clarke (2006): SERRATE: a new player on the plant microRNA scene. - EMBO Rep, 7(10):1052-8.
  14. Jun Lu, Gad Getz, Eric A Miska, Ezequiel Alvarez-Saavedra, Justin Lamb, David Peck, Alejandro Sweet-Cordero, Benjamin L Ebert, Raymond H Mak, Adolfo A Ferrando, James R Downing, Tyler Jacks, H Robert Horvitz and Todd R Golub (2005): MicroRNA expression profiles classify human cancers. - Nature, 435:834–838.
  15. Cheng Lu, Shivakundan Singh Tej, Shujun Luo, Christian D Haudenschild, Blake C Meyers and Pamela J Green (2005): Elucidation of the small RNA component of the transcriptome. - Science, 309(5740):1567-9.
  16. Colin D. Malone and Gregory J. Hannon (2009): Small RNAs as Guardians of the Genome. - Cell, 136:656--668.
  17. Elizabeth P Murchison, Janet F Partridge, Oliver H Tam, Sihem Cheloufi and Gregory J Hannon (2005): Characterization of Dicer-deficient murine embryonic stem cells. - Proceedings of the National Academy of Sciences, 102:12135–12140.
  18. Kenji Nakahara, Kevin Kim, Christin Sciulli, Susan R Dowd, Jonathan S Minden and Richard W Carthew (2005): Targets of microRNA regulation in the Drosophila oocyte proteome. - Proceedings of the National Academy of Sciences, 102:12023–12028.
  19. Guy Riddihough (2005): In the forests of rna dark matter. - Science, 309:1507.
  20. Magdalena Skipper (2008): Gene regulation: A tiny missing link for regulatory networks. - Nat Rev Genet, 9:813--813.
  21. Matthew W Vaughn and Rob Martienssen (2005): It's a small RNA world, after all. - Science, 309(5740):1525-6.
  22. Ngan Vo, Matthew E Klein, Olga Varlamova, David M Keller, Tadashi Yamamoto, Richard H Goodman and Soren Impey (2005): From The Cover: A cAMP-response element binding protein-induced microRNA regulates neuronal morphogenesis. - Proceedings of the National Academy of Sciences, 102:16426–16431.
  23. Adam Woolfe, Martin Goodson, Debbie K Goode, Phil Snell, Gayle K McEwen, Tanya Vavouri, Sarah F Smith, Phil North, Heather Callaway, Krys Kelly, Klaudia Walter, Irina Abnizova, Walter Gilks, Yvonne JK Edwards, Julie E Cooke and Greg Elgar (2005): Highly conserved non-coding sequences are associated with vertebrate development. - PLoS Biology, 3:e7 EP -.
  24. Gregory A. Wray and Courtney C. Babbitt (2008): GENETICS: Enhancing Gene Regulation. - Science, 321:1300--1301.
  25. J Wu and X Xie (2006): Comparative Sequence Analysis Reveals an Intricate Network Among REST, CREB and miRNA in Mediating Neuronal Gene Expression. - Genome Biol, 7(9):R85.
  26. Xiaohui Xie, Jun Lu, E J Kulbokas, Todd R Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S Lander and Manolis Kellis (2005): Systematic discovery of regulatory motifs in human promoters and 3' UTRs bycomparison of several mammals. - Nature.
  27. Li Yang, Ziqiang Liu, Feng Lu, Aiwu Dong and Hai Huang (2006): SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis. - Plant J, 47(6):841-50.
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